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TRA-AGC3-1 tRNA-Ala (anticodon AGC) 3-1 [ Homo sapiens (human) ]

Gene ID: 100189299, updated on 10-Oct-2023

Summary

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Official Symbol
TRA-AGC3-1provided by HGNC
Official Full Name
tRNA-Ala (anticodon AGC) 3-1provided by HGNC
Primary source
HGNC:HGNC:34865
See related
AllianceGenome:HGNC:34865
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAA28
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Genomic context

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Location:
6p22.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (28607156..28607227)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (28478529..28478600)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (28574933..28575004)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene SCAN domain containing 3 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:28557063-28557742 Neighboring gene ZBED9 antisense RNA 1 Neighboring gene tRNA-Gln (anticodon TTG) 2-1 Neighboring gene tRNA-Ser (anticodon GCT) 4-1 Neighboring gene tRNA-Ala (anticodon TGC) 9-1 Neighboring gene uncharacterized LOC105374996 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:28607773-28608273 Neighboring gene tRNA-Ala (anticodon TGC) 2-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Ala (AGC) 3-1
  • transfer RNA alanine 28 (anticodon AGC)
  • transfer RNA-Ala (AGC) 3-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    28607156..28607227
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_113891.3 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    97032..97103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    28478529..28478600
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
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