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TRA-CGC1-1 tRNA-Ala (anticodon CGC) 1-1 [ Homo sapiens (human) ]

Gene ID: 100189308, updated on 10-Oct-2023

Summary

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Official Symbol
TRA-CGC1-1provided by HGNC
Official Full Name
tRNA-Ala (anticodon CGC) 1-1provided by HGNC
Primary source
HGNC:HGNC:34875
See related
AllianceGenome:HGNC:34875
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAA29
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Genomic context

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See TRA-CGC1-1 in Genome Data Viewer
Location:
6p22.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (26553503..26553574)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (26421900..26421971)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (26553731..26553802)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17013 Neighboring gene tRNA-Val (anticodon CAC) 1-6 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24246 Neighboring gene high mobility group nucleosomal binding domain 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:26549364-26550318 Neighboring gene HMGN4-LOC105374988 intergenic CAGE-defined low expression enhancer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24247 Neighboring gene CRISPRi-validated cis-regulatory element chr6.1175 Neighboring gene tRNA-Ile (anticodon AAT) 5-1 Neighboring gene tRNA-Pro (anticodon AGG) 2-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Ala (CGC) 1-1
  • transfer RNA alanine 29 (anticodon CGC)
  • transfer RNA-Ala (CGC) 1-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    26553503..26553574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791780.1 Reference GRCh38.p14 PATCHES

    Range
    99683..99754
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    26421900..26421971
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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