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TRL-CAG1-1 tRNA-Leu (anticodon CAG) 1-1 [ Homo sapiens (human) ]

Gene ID: 100189394, updated on 10-Oct-2023

Summary

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Official Symbol
TRL-CAG1-1provided by HGNC
Official Full Name
tRNA-Leu (anticodon CAG) 1-1provided by HGNC
Primary source
HGNC:HGNC:34962
See related
AllianceGenome:HGNC:34962
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAL38
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Genomic context

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Location:
1q23.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (161441533..161441615)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (160704125..160704207)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (161411323..161411405)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1480 Neighboring gene tRNA-Gly (anticodon TCC) 4-1 Neighboring gene tRNA-Asp (anticodon GTC) 2-1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:161411293-161412150 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:161412151-161413008 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:161413009-161413866 Neighboring gene tRNA-Gly (anticodon GCC) 1-1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:161416137-161416690 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:161416691-161417243 Neighboring gene tRNA-Glu (anticodon CTC) 1-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Leu (CAG) 1-1
  • transfer RNA leucine 38 (anticodon CAG)
  • transfer RNA-Leu (CAG) 1-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    161441533..161441615
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    160704125..160704207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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