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TRK-CTT2-2 tRNA-Lys (anticodon CTT) 2-2 [ Homo sapiens (human) ]

Gene ID: 100189399, updated on 10-Oct-2023

Summary

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Official Symbol
TRK-CTT2-2provided by HGNC
Official Full Name
tRNA-Lys (anticodon CTT) 2-2provided by HGNC
Primary source
HGNC:HGNC:34967
See related
AllianceGenome:HGNC:34967
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAK33; TRK-CTT2-3
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Genomic context

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Location:
5q35.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (181207755..181207827)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (181767776..181767848)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (180634755..180634827)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 7 Neighboring gene TRIM7 antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 12726 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16787 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16788 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16789 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16790 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23783 Neighboring gene tRNA-Ala (anticodon TGC) 3-1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23784 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23785 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23786 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16791 Neighboring gene tRNA-Val (anticodon AAC) 1-4 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16792 Neighboring gene tRNA-Lys (anticodon CTT) 2-3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Lys (CTT) 2-2
  • tRNA-Lys-CTT-2-3
  • transfer RNA lysine 33 (anticodon CUU)
  • transfer RNA-Lys (CTT) 2-2
  • transfer RNA-Lys (CTT) 2-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    181207755..181207827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    181767776..181767848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
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