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PVALB parvalbumin [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100190716, updated on 8-Mar-2024

Summary

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Gene symbol
PVALB
Gene description
parvalbumin
See related
Ensembl:ENSTGUG00000010713
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1A
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 1A NC_044212.2 (50220017..50233161)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 1A NC_044999.1 (49631928..49645115)

Chromosome 1A - NC_044212.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115493372 Neighboring gene colony stimulating factor 2 receptor subunit beta Neighboring gene neutrophil cytosolic factor 4 Neighboring gene intraflagellar transport 27 Neighboring gene calcium voltage-gated channel auxiliary subunit gamma 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes. Wada K, et al. Proc Natl Acad Sci U S A, 2006 Oct 10. PMID 17018643, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
parvalbumin alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001245831.1 → NP_001232760.1  parvalbumin alpha

    See identical proteins and their annotated locations for NP_001232760.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ215755
    UniProtKB/TrEMBL
    A0A674HBY2, B5G1U4
    Conserved Domains (1) summary
    cd16254
    Location:9 → 109
    EFh_parvalbumin_alpha; EF-hand, calcium binding motif, found in alpha-parvalbumin

RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044212.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    50220017..50233161
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030288955.3 → XP_030144815.1  parvalbumin alpha isoform X1

    UniProtKB/TrEMBL
    A0A674HBY2, B5G1U4
    Conserved Domains (1) summary
    cd16254
    Location:9 → 109
    EFh_parvalbumin_alpha; EF-hand, calcium binding motif, found in alpha-parvalbumin

  2. XM_012569130.4 → XP_012424584.1  parvalbumin alpha isoform X1

    See identical proteins and their annotated locations for XP_012424584.1

    UniProtKB/TrEMBL
    A0A674HBY2, B5G1U4
    Conserved Domains (1) summary
    cd16254
    Location:9 → 109
    EFh_parvalbumin_alpha; EF-hand, calcium binding motif, found in alpha-parvalbumin

  3. XM_012569131.4 → XP_012424585.1  parvalbumin alpha isoform X1

    See identical proteins and their annotated locations for XP_012424585.1

    UniProtKB/TrEMBL
    A0A674HBY2, B5G1U4
    Related
    ENSTGUP00000027257.1
    Conserved Domains (1) summary
    cd16254
    Location:9 → 109
    EFh_parvalbumin_alpha; EF-hand, calcium binding motif, found in alpha-parvalbumin

  4. XM_030288974.3 → XP_030144834.1  parvalbumin alpha isoform X1

    UniProtKB/TrEMBL
    A0A674HBY2, B5G1U4
    Related
    ENSTGUP00000033152.1
    Conserved Domains (1) summary
    cd16254
    Location:9 → 109
    EFh_parvalbumin_alpha; EF-hand, calcium binding motif, found in alpha-parvalbumin
Nucleotide Protein
Heading Accession and Version

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