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fastkd3 FAST kinase domains 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100216178, updated on 8-Mar-2024

Summary

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Official Symbol
fastkd3provided by Xenbase
Official Full Name
FAST kinase domains 3provided by Xenbase
Primary source
Xenbase:XB-GENE-5998409
See related
Ensembl:ENSXETG00000007094
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (72607103..72784714, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (41625820..41802448, complement)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene ATP synthase c subunit lysine N-methyltransferase Neighboring gene uncharacterized LOC105947654 Neighboring gene solute carrier family 9 member A3 Neighboring gene uncharacterized LOC101732558 Neighboring gene 5-methyltetrahydrofolate-homocysteine methyltransferase reductase Neighboring gene transmembrane protein 245 Neighboring gene uncharacterized LOC105945531

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phosphorylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of mitochondrial mRNA stability IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
FAST kinase domain-containing protein 3, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142147.1 → NP_001135619.2  FAST kinase domain-containing protein 3, mitochondrial

    Status: VALIDATED

    Source sequence(s)
    BC168451
    UniProtKB/TrEMBL
    A0A6I8SMI5, A0A8J0QF03
    Related
    ENSXETP00000015439.5, ENSXETT00000015439.5
    Conserved Domains (3) summary
    smart00952
    Location:624 → 681
    RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
    pfam06743
    Location:426 → 494
    FAST_1; FAST kinase-like protein, subdomain 1
    pfam08368
    Location:524 → 610
    FAST_2; FAST kinase-like protein, subdomain 2

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    72607103..72784714 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031903265.1 → XP_031759125.1  FAST kinase domain-containing protein 3, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A8J0T3U7, F7BKJ9
    Conserved Domains (3) summary
    smart00952
    Location:607 → 670
    RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
    pfam06743
    Location:409 → 477
    FAST_1; FAST kinase-like protein, subdomain 1
    pfam08368
    Location:507 → 593
    FAST_2; FAST kinase-like protein, subdomain 2

  2. XM_031903267.1 → XP_031759127.1  FAST kinase domain-containing protein 3, mitochondrial isoform X4

    UniProtKB/TrEMBL
    A0A8J1JML6, F7BKJ9
    Conserved Domains (2) summary
    smart00952
    Location:537 → 600
    RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
    pfam06743
    Location:426 → 494
    FAST_1; FAST kinase-like protein, subdomain 1

  3. XM_012964381.3 → XP_012819835.1  FAST kinase domain-containing protein 3, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A6I8SMI5, A0A803JXS1
    Related
    ENSXETP00000112809.1, ENSXETT00000113742.1
    Conserved Domains (3) summary
    smart00952
    Location:624 → 687
    RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
    pfam06743
    Location:426 → 494
    FAST_1; FAST kinase-like protein, subdomain 1
    pfam08368
    Location:524 → 610
    FAST_2; FAST kinase-like protein, subdomain 2

  4. XM_018094571.2 → XP_017950060.1  FAST kinase domain-containing protein 3, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A8J0T3U7, F7BKJ9
    Conserved Domains (3) summary
    smart00952
    Location:607 → 670
    RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
    pfam06743
    Location:409 → 477
    FAST_1; FAST kinase-like protein, subdomain 1
    pfam08368
    Location:507 → 593
    FAST_2; FAST kinase-like protein, subdomain 2

  5. XM_031903266.1 → XP_031759126.1  FAST kinase domain-containing protein 3, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A803JHM9, A0A803K9L8
    Related
    ENSXETP00000117085.1, ENSXETT00000115364.1
    Conserved Domains (3) summary
    smart00952
    Location:624 → 659
    RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
    pfam06743
    Location:426 → 494
    FAST_1; FAST kinase-like protein, subdomain 1
    pfam08368
    Location:524 → 610
    FAST_2; FAST kinase-like protein, subdomain 2
Nucleotide Protein Strain
Heading Accession and Version

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