Format

Send to:

Choose Destination

CIITA class II major histocompatibility complex transactivator [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100223542, updated on 16-Oct-2021

Summary

Gene symbol
CIITA
Gene description
class II major histocompatibility complex transactivator
See related
Ensembl:ENSTGUG00000004838
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See CIITA in Genome Data Viewer
Location:
chromosome: 14
Exon count:
21
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 14 NC_044226.2 (10176916..10207259, complement)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 14 NC_045013.1 (10312623..10350332, complement)

Chromosome 14 - NC_044226.2Genomic Context describing neighboring genes Neighboring gene C-type lectin domain containing 16A Neighboring gene Dexi homolog Neighboring gene trans-golgi network vesicle protein 23 homolog A Neighboring gene uncharacterized LOC115497302 Neighboring gene nucleotide binding protein 1

Genomic regions, transcripts, and products

General protein information

Preferred Names
MHC class II transactivator

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044226.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    10176916..10207259 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041719144.1XP_041575078.1  MHC class II transactivator isoform X1

    Conserved Domains (5) summary
    COG5635
    Location:281483
    COG5635; Predicted NTPase, NACHT family domain [Signal transduction mechanisms]
    sd00033
    Location:9821012
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:953969
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:397566
    NACHT; NACHT domain
    cl39015
    Location:7831108
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
  2. XM_041719143.1XP_041575077.1  MHC class II transactivator isoform X1

    Conserved Domains (5) summary
    COG5635
    Location:281483
    COG5635; Predicted NTPase, NACHT family domain [Signal transduction mechanisms]
    sd00033
    Location:9821012
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:953969
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:397566
    NACHT; NACHT domain
    cl39015
    Location:7831108
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
  3. XM_041719145.1XP_041575079.1  MHC class II transactivator isoform X2

    Conserved Domains (4) summary
    COG5635
    Location:266463
    COG5635; Predicted NTPase, NACHT family domain [Signal transduction mechanisms]
    sd00033
    Location:962992
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:933949
    LRR_AMN1; leucine-rich repeat [structural motif]
    cl39015
    Location:7631088
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
  4. XM_041719141.1XP_041575075.1  MHC class II transactivator isoform X1

    Conserved Domains (5) summary
    COG5635
    Location:281483
    COG5635; Predicted NTPase, NACHT family domain [Signal transduction mechanisms]
    sd00033
    Location:9821012
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:953969
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:397566
    NACHT; NACHT domain
    cl39015
    Location:7831108
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
  5. XM_041719142.1XP_041575076.1  MHC class II transactivator isoform X1

    Conserved Domains (5) summary
    COG5635
    Location:281483
    COG5635; Predicted NTPase, NACHT family domain [Signal transduction mechanisms]
    sd00033
    Location:9821012
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:953969
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:397566
    NACHT; NACHT domain
    cl39015
    Location:7831108
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
Support Center