U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CIITA class II major histocompatibility complex transactivator [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100223542, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
CIITA
Gene description
class II major histocompatibility complex transactivator
See related
Ensembl:ENSTGUG00000004838
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 14
Exon count:
21
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 14 NC_044226.2 (10176916..10207259, complement)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 14 NC_045013.1 (10312623..10350332, complement)

Chromosome 14 - NC_044226.2Genomic Context describing neighboring genes Neighboring gene C-type lectin domain containing 16A Neighboring gene Dexi homolog Neighboring gene trans-golgi network vesicle protein 23 homolog A Neighboring gene uncharacterized LOC115497302 Neighboring gene NUBP iron-sulfur cluster assembly factor 1, cytosolic

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of MHC class I biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of MHC class II biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
MHC class II transactivator

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044226.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    10176916..10207259 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041719144.1 → XP_041575078.1  MHC class II transactivator isoform X1

    UniProtKB/TrEMBL
    H0Z338
    Conserved Domains (5) summary
    COG5635
    Location:281 → 483
    COG5635; Predicted NTPase, NACHT family domain [Signal transduction mechanisms]
    sd00033
    Location:982 → 1012
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:953 → 969
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:397 → 566
    NACHT; NACHT domain
    cl39015
    Location:783 → 1108
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

  2. XM_041719143.1 → XP_041575077.1  MHC class II transactivator isoform X1

    UniProtKB/TrEMBL
    H0Z338
    Conserved Domains (5) summary
    COG5635
    Location:281 → 483
    COG5635; Predicted NTPase, NACHT family domain [Signal transduction mechanisms]
    sd00033
    Location:982 → 1012
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:953 → 969
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:397 → 566
    NACHT; NACHT domain
    cl39015
    Location:783 → 1108
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

  3. XM_041719145.1 → XP_041575079.1  MHC class II transactivator isoform X2

    Conserved Domains (4) summary
    COG5635
    Location:266 → 463
    COG5635; Predicted NTPase, NACHT family domain [Signal transduction mechanisms]
    sd00033
    Location:962 → 992
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:933 → 949
    LRR_AMN1; leucine-rich repeat [structural motif]
    cl39015
    Location:763 → 1088
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

  4. XM_041719141.1 → XP_041575075.1  MHC class II transactivator isoform X1

    UniProtKB/TrEMBL
    H0Z338
    Conserved Domains (5) summary
    COG5635
    Location:281 → 483
    COG5635; Predicted NTPase, NACHT family domain [Signal transduction mechanisms]
    sd00033
    Location:982 → 1012
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:953 → 969
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:397 → 566
    NACHT; NACHT domain
    cl39015
    Location:783 → 1108
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

  5. XM_041719142.1 → XP_041575076.1  MHC class II transactivator isoform X1

    UniProtKB/TrEMBL
    H0Z338
    Conserved Domains (5) summary
    COG5635
    Location:281 → 483
    COG5635; Predicted NTPase, NACHT family domain [Signal transduction mechanisms]
    sd00033
    Location:982 → 1012
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:953 → 969
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:397 → 566
    NACHT; NACHT domain
    cl39015
    Location:783 → 1108
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.