U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HYDIN2 HYDIN axonemal central pair apparatus protein 2 (pseudogene) [ Homo sapiens (human) ]

Gene ID: 100288805, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
HYDIN2provided by HGNC
Official Full Name
HYDIN axonemal central pair apparatus protein 2 (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:33129
See related
MIM:610813; AllianceGenome:HGNC:33129
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HYDINP1
Expression
Biased expression in testis (RPKM 2.1), brain (RPKM 0.8) and 12 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
1q21.1
Exon count:
56
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (146486332..146822034)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (147986385..148322048, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 Unlocalized Scaffold NT_167207.1 (132569..468683, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371235 Neighboring gene uncharacterized LOC124904407 Neighboring gene uncharacterized LOC105371233 Neighboring gene RNA, 5S ribosomal pseudogene 536 Neighboring gene uncharacterized LOC124900456 Neighboring gene NBPF member 12 Neighboring gene profilin 1 pseudogene 8

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The birth of a human-specific neural gene by incomplete duplication and gene fusion. Dougherty ML, et al. Genome Biol, 2017 Mar 9. PMID 28279197, Free PMC Article
  2. A 360-kb interchromosomal duplication of the human HYDIN locus. Doggett NA, et al. Genomics, 2006 Dec. PMID 16938426
  3. The full-ORF clone resource of the German cDNA Consortium. Bechtel S, et al. BMC Genomics, 2007 Oct 31. PMID 17974005, Free PMC Article
  4. The sequence and analysis of duplication-rich human chromosome 16. Martin J, et al. Nature, 2004 Dec 23. PMID 15616553
  5. Prediction of the coding sequences of unidentified human genes. XX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. Nagase T, et al. DNA Res, 2001 Apr 27. PMID 11347906

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Other Names

  • HYDIN, axonemal central pair apparatus protein pseudogene 1
  • HYDIN2, axonemal central pair apparatus protein (pseudogene)
  • hydrocephalus inducing homolog 2

Clone Names

  • FLJ14665, KIAA1864, DKFZp761B238, DKFZp761M1613

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables triplet codon-amino acid adaptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103556.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AB058767, AC241929, AC245407, AK027571, AL833826, AL834340, BG292092, DA303757, DR000174, H53415

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    146486332..146822034
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    147986385..148322048 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_049745.1: Suppressed sequence

    Description
    NR_049745.1: This RefSeq was suppressed because it was not a good representation of the HYDIN2 locus.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools