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canx calnexin [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100304606, updated on 8-Mar-2024

Summary

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Gene symbol
canx
Gene description
calnexin
See related
Ensembl:ENSIPUG00000012736
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 8
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 8 NC_030423.2 (1767466..1776265, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 8 NC_030423.1 (1586572..1595314, complement)

Chromosome 8 - NC_030423.2Genomic Context describing neighboring genes Neighboring gene leukotriene C4 synthase Neighboring gene mastermind-like transcriptional coactivator 1 Neighboring gene alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B Neighboring gene sequestosome 1 Neighboring gene MRN complex interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the molecular chaperone calnexin in the channel catfish, Ictalurus punctatus, and its association with MHC class II molecules. Fuller JR, et al. Dev Comp Immunol, 2004 May 17. PMID 15177114
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calnexin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200180.1 → NP_001187109.1  calnexin precursor

    See identical proteins and their annotated locations for NP_001187109.1

    Status: PROVISIONAL

    Source sequence(s)
    AY288070
    UniProtKB/TrEMBL
    Q6WGJ8
    Related
    ENSIPUP00000018908.1, ENSIPUT00000019711.1
    Conserved Domains (2) summary
    pfam00262
    Location:84 → 453
    Calreticulin; Calreticulin family
    pfam03896
    Location:8 → 71
    TRAP_alpha; Translocon-associated protein (TRAP), alpha subunit

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030423.2 Reference Coco_2.0 Primary Assembly

    Range
    1767466..1776265 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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