Format

Send to:

Choose Destination

canx calnexin [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100304606, updated on 11-Apr-2020

Summary

Gene symbol
canx
Gene description
calnexin
See related
Ensembl:ENSIPUG00000012736
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Annotation information
Annotation category: partial on reference assembly
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See canx in Genome Data Viewer
Location:
chromosome: 8
Exon count:
14
Annotation release Status Assembly Chr Location
100 current IpCoco_1.2 (GCF_001660625.1) 8 NC_030423.1 (1586572..1595314, complement)

Chromosome 8 - NC_030423.1Genomic Context describing neighboring genes Neighboring gene leukotriene C4 synthase Neighboring gene mastermind-like transcriptional coactivator 1 Neighboring gene alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B Neighboring gene sequestosome 1 Neighboring gene MRN complex interacting protein

Genomic regions, transcripts, and products

Genomic Sequence:
NC_030423.1 Chromosome 8 Reference IpCoco_1.2 Primary Assembly

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200180.1NP_001187109.1  calnexin precursor

    See identical proteins and their annotated locations for NP_001187109.1

    Status: PROVISIONAL

    Source sequence(s)
    AY288070
    UniProtKB/TrEMBL
    Q6WGJ8
    Related
    ENSIPUP00000018908.1, ENSIPUT00000019711.1
    Conserved Domains (2) summary
    pfam00262
    Location:84453
    Calreticulin; Calreticulin family
    pfam03896
    Location:871
    TRAP_alpha; Translocon-associated protein (TRAP), alpha subunit

RefSeqs of Annotated Genomes: Ictalurus punctatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IpCoco_1.2 Primary Assembly

Genomic

  1. NC_030423.1 Reference IpCoco_1.2 Primary Assembly

    Range
    1586572..1595314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center