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d6fadc delta-6 fatty acyl desaturase-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 100329172, updated on 30-Nov-2023

Summary

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Gene symbol
d6fadc
Gene description
delta-6 fatty acyl desaturase-like
See related
Ensembl:ENSSSAG00000070102
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
D6fad_c
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Genomic context

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Location:
chromosome: ssa23
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa23 NC_059464.1 (47169829..47180383)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa23 NC_027322.1 (46385746..46397759, complement)

Chromosome ssa23 - NC_059464.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA Delta-6 desaturase Neighboring gene delta-5 fatty acyl desaturase Neighboring gene epidermal growth factor receptor kinase substrate 8-like protein 2 Neighboring gene transmembrane protein 80

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multiple genes for functional 6 fatty acyl desaturases (Fad) in Atlantic salmon (Salmo salar L.): gene and cDNA characterization, functional expression, tissue distribution and nutritional regulation. Monroig O, et al. Biochim Biophys Acta, 2010 Sep. PMID 20403458
  2. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-6 fatty acyl desaturase-like
Names
delta-6 fatty acyl desaturase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001171780.1 → NP_001165251.1  delta-6 fatty acyl desaturase-like

    See identical proteins and their annotated locations for NP_001165251.1

    Status: PROVISIONAL

    Source sequence(s)
    GU207401
    UniProtKB/TrEMBL
    A0A1S3PE21, D2KE03
    Related
    ENSSSAP00000092912.1, ENSSSAT00000127179.2
    Conserved Domains (3) summary
    PLN03199
    Location:34 → 452
    PLN03199; delta6-acyl-lipid desaturase-like protein; Provisional
    cd03506
    Location:175 → 425
    Delta6-FADS-like; The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases ...
    pfam00173
    Location:33 → 107
    Cyt-b5; Cytochrome b5-like Heme/Steroid binding domain

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059464.1 Reference Ssal_v3.1

    Range
    47169829..47180383
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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