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slc29a1b solute carrier family 29 member 1b [ Danio rerio (zebrafish) ]

Gene ID: 100331439, updated on 11-Apr-2024

Summary

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Official Symbol
slc29a1bprovided by ZNC
Official Full Name
solute carrier family 29 member 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-130415-4
See related
Ensembl:ENSDARG00000054447 AllianceGenome:ZFIN:ZDB-GENE-130415-4
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable nucleoside transmembrane transporter activity. Predicted to be involved in uridine transport. Predicted to act upstream of or within nucleoside transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in blood cell and vascular endothelium. Orthologous to human SLC29A1 (solute carrier family 29 member 1 (Augustine blood group)). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 11
Exon count:
15
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (43418424..43455955)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (43126161..43164128)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene sulfotransferase family, cytosolic, 6b, member 1 Neighboring gene vasoactive intestinal peptide b Neighboring gene transmembrane protein 63Bb Neighboring gene GLI family zinc finger 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Global analysis of the haematopoietic and endothelial transcriptome during zebrafish development. Cannon JE, et al. Mech Dev, 2013 Feb. PMID 23072875, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables nucleoside transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables nucleoside transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables uridine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within nucleoside transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in uridine transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in lateral plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
equilibrative nucleoside transporter 1-like
Names
solute carrier family 29 (equilibrative nucleoside transporter), member 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    43418424..43455955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009306312.3 → XP_009304587.1  equilibrative nucleoside transporter 1-like

    See identical proteins and their annotated locations for XP_009304587.1

    UniProtKB/TrEMBL
    A0A140LG26, A0A8M2BK70
    Conserved Domains (1) summary
    TIGR00939
    Location:17 → 436
    2a57; Equilibrative Nucleoside Transporter (ENT)

  2. XM_021479916.1 → XP_021335591.1  equilibrative nucleoside transporter 1-like

    UniProtKB/TrEMBL
    A0A140LG26, A0A8M2BK70
    Related
    ENSDARP00000142204.1, ENSDART00000172982.2
    Conserved Domains (1) summary
    TIGR00939
    Location:17 → 436
    2a57; Equilibrative Nucleoside Transporter (ENT)

  3. XM_005172933.4 → XP_005172990.1  equilibrative nucleoside transporter 1-like

    See identical proteins and their annotated locations for XP_005172990.1

    UniProtKB/TrEMBL
    A0A140LG26, A0A8M2BK70
    Related
    ENSDARP00000154025.1, ENSDART00000192526.1
    Conserved Domains (1) summary
    TIGR00939
    Location:17 → 436
    2a57; Equilibrative Nucleoside Transporter (ENT)
Nucleotide Protein Strain
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