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tap1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) [ Danio rerio (zebrafish) ]

Gene ID: 100333043, updated on 16-Oct-2021

Summary

Official Symbol
tap1provided by ZNC
Official Full Name
transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)provided by ZNC
Primary source
ZFIN:ZDB-GENE-050517-43
See related
Ensembl:ENSDARG00000079766
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
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Genomic context

See tap1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (48678574..48705831)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (48736649..48763813)
103 previous assembly Zv9 (GCF_000002035.4) 16 NC_007127.5 (52012759..52039349)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene pre-B-cell leukemia homeobox 2 Neighboring gene notch receptor, like Neighboring gene bromodomain containing 2b Neighboring gene si:ch73-31d8.2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ABC-type peptide transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables ATPase-coupled transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables ATPase-coupled transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in peptide transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in integral component of membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
antigen peptide transporter 1
Names
abcb2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    48678574..48705831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002665007.3XP_002665053.1  antigen peptide transporter 1

    UniProtKB/TrEMBL
    E7F8A9
    Related
    ENSDARP00000124923.1, ENSDART00000150156.3
    Conserved Domains (3) summary
    TIGR00958
    Location:42712
    3a01208; Conjugate Transporter-2 (CT2) Family protein
    pfam00664
    Location:166433
    ABC_membrane; ABC transporter transmembrane region
    cl21455
    Location:467692
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
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