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pax1a paired box 1a [ Oryzias latipes (Japanese medaka) ]

Gene ID: 100335144, updated on 7-Jun-2022

Summary

Gene symbol
pax1a
Gene description
paired box 1a
See related
EnsemblRapid:ENSORLG00000017412
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
pax1
Orthologs
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Genomic context

See pax1a in Genome Data Viewer
Location:
chromosome: 22
Exon count:
5
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 22 NC_019880.2 (16415214..16418977, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 22 NC_019880.1 (16159260..16162837, complement)

Chromosome 22 - NC_019880.2Genomic Context describing neighboring genes Neighboring gene forkhead box A2 Neighboring gene uncharacterized LOC110017470 Neighboring gene NK2 homeobox 2a Neighboring gene NK2 homeobox 4a

Genomic regions, transcripts, and products

General protein information

Preferred Names
paired box protein Pax-1
Names
paired box 1
paired-box transcription factor pax1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001172049.1NP_001165520.1  paired box protein Pax-1

    See identical proteins and their annotated locations for NP_001165520.1

    Status: PROVISIONAL

    Source sequence(s)
    AB187121
    UniProtKB/TrEMBL
    C6KTG1
    Related
    ENSORLP00000074992.1, ENSORLT00000101198.1
    Conserved Domains (1) summary
    cd00131
    Location:4131
    PAX; Paired Box domain

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019880.2 Reference ASM223467v1 Primary Assembly

    Range
    16415214..16418977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023951243.1XP_023807011.1  paired box protein Pax-1 isoform X2

    Conserved Domains (1) summary
    cd00131
    Location:4131
    PAX; Paired Box domain
  2. XM_011490118.3XP_011488420.1  paired box protein Pax-1 isoform X1

    Related
    ENSORLP00000021775.3, ENSORLT00000021776.3
    Conserved Domains (2) summary
    cd00131
    Location:4131
    PAX; Paired Box domain
    pfam15991
    Location:145318
    G_path_suppress; G-protein pathway suppressor