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Tent5b terminal nucleotidyltransferase 5B [ Mus musculus (house mouse) ]

Gene ID: 100342, updated on 23-Jun-2021

Summary

Official Symbol
Tent5bprovided by MGI
Official Full Name
terminal nucleotidyltransferase 5Bprovided by MGI
Primary source
MGI:MGI:2140500
See related
Ensembl:ENSMUSG00000046694
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam46; Fam46b; AU045678; AU046069; 4732473B16Rik
Expression
Biased expression in testis adult (RPKM 17.7), stomach adult (RPKM 15.3) and 11 other tissues See more
Orthologs
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Genomic context

See Tent5b in Genome Data Viewer
Location:
4; 4 D2.3
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (133207444..133215251)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (133480133..133487940)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (133036048..133043855)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700091J24 gene Neighboring gene predicted gene, 42322 Neighboring gene predicted gene 13257 Neighboring gene TMF1-regulated nuclear protein 1 Neighboring gene predicted gene, 42323 Neighboring gene keratinocyte differentiation factor 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA adenylyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables nucleotidyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in mRNA stabilization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
terminal nucleotidyltransferase 5B
Names
family with sequence similarity 46, member B
protein FAM46B
putative nucleotidyltransferase FAM46B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175307.6NP_780516.1  terminal nucleotidyltransferase 5B

    See identical proteins and their annotated locations for NP_780516.1

    Status: VALIDATED

    Source sequence(s)
    AL627228
    Consensus CDS
    CCDS18748.1
    UniProtKB/Swiss-Prot
    Q8C152
    Related
    ENSMUSP00000056015.7, ENSMUST00000051676.7
    Conserved Domains (1) summary
    pfam07984
    Location:52371
    NTP_transf_7; Nucleotidyltransferase

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    133207444..133215251
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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