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H3f3l1 H3.3 histone like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100359421, updated on 29-Feb-2024

Summary

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Official Symbol
H3f3l1provided by RGD
Official Full Name
H3.3 histone like 1provided by RGD
Primary source
RGD:2323872
See related
AllianceGenome:RGD:2323872
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Spleen (RPKM 1797.4), Thymus (RPKM 1584.0) and 9 other tissues See more
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Genomic context

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Location:
6q21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (63827248..63828885, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (58099930..58101667, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (60988678..60989919, complement)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120093202 Neighboring gene zinc finger protein 277 Neighboring gene dedicator of cytokinesis 4 Neighboring gene uncharacterized LOC102552766 Neighboring gene uncharacterized LOC120093204 Neighboring gene inner mitochondrial membrane peptidase subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
histone H3.3A-like
Names
histone H3.3-like
histone H3.3B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    63827248..63828885 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063262628.1 → XP_063118698.1  histone H3.3A-like

Nucleotide Protein Strain
Heading Accession and Version

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