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Ddx60 DEXD/H-box helicase 60 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100360801, updated on 24-Jul-2021

Summary

Symbol
Ddx60provided by RGD
Full Name
DEXD/H-box helicase 60provided by RGD
Primary source
RGD:1560014
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1560014
Expression
Biased expression in Spleen (RPKM 282.6), Lung (RPKM 203.1) and 8 other tissues See more
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Genomic context

See Ddx60 in Genome Data Viewer
Location:
16p12
Exon count:
43
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (28077000..28197903, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (29816144..29936220, complement)

Chromosome 16 - NC_051351.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103693929 Neighboring gene palladin-like 1 Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene uncharacterized LOC120097508 Neighboring gene palladin, cytoskeletal associated protein Neighboring gene uncharacterized LOC120097383 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
DEXD/H-box helicase 60; probable ATP-dependent RNA helicase DDX60
Names
DEAD (Asp-Glu-Ala-Asp) box polypeptide 60
mCG11385-like
probable ATP-dependent RNA helicase DDX60-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051351.1 Reference mRatBN7.2 Primary Assembly

    Range
    28077000..28197903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039095163.1XP_038951091.1  probable ATP-dependent RNA helicase DDX60 isoform X1

    Conserved Domains (2) summary
    COG4581
    Location:7591369
    Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
    cd18025
    Location:760937
    DEXHc_DDX60; DEXH-box helicase domain of DEAD box protein 60
  2. XM_039095164.1XP_038951092.1  probable ATP-dependent RNA helicase DDX60 isoform X1

    Conserved Domains (2) summary
    COG4581
    Location:7591369
    Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
    cd18025
    Location:760937
    DEXHc_DDX60; DEXH-box helicase domain of DEAD box protein 60
  3. XM_039095170.1XP_038951098.1  probable ATP-dependent RNA helicase DDX60 isoform X3

    Conserved Domains (2) summary
    COG4581
    Location:6451255
    Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
    cd18025
    Location:646823
    DEXHc_DDX60; DEXH-box helicase domain of DEAD box protein 60
  4. XM_039095168.1XP_038951096.1  probable ATP-dependent RNA helicase DDX60 isoform X2

    Conserved Domains (2) summary
    COG4581
    Location:7581368
    Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
    cd18025
    Location:759936
    DEXHc_DDX60; DEXH-box helicase domain of DEAD box protein 60
  5. XM_039095162.1XP_038951090.1  probable ATP-dependent RNA helicase DDX60 isoform X1

    Conserved Domains (2) summary
    COG4581
    Location:7591369
    Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
    cd18025
    Location:760937
    DEXHc_DDX60; DEXH-box helicase domain of DEAD box protein 60
  6. XM_039095165.1XP_038951093.1  probable ATP-dependent RNA helicase DDX60 isoform X1

    Conserved Domains (2) summary
    COG4581
    Location:7591369
    Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
    cd18025
    Location:760937
    DEXHc_DDX60; DEXH-box helicase domain of DEAD box protein 60
  7. XM_039095166.1XP_038951094.1  probable ATP-dependent RNA helicase DDX60 isoform X1

    Conserved Domains (2) summary
    COG4581
    Location:7591369
    Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
    cd18025
    Location:760937
    DEXHc_DDX60; DEXH-box helicase domain of DEAD box protein 60
  8. XM_039095167.1XP_038951095.1  probable ATP-dependent RNA helicase DDX60 isoform X1

    Conserved Domains (2) summary
    COG4581
    Location:7591369
    Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
    cd18025
    Location:760937
    DEXHc_DDX60; DEXH-box helicase domain of DEAD box protein 60
  9. XM_039095171.1XP_038951099.1  probable ATP-dependent RNA helicase DDX60 isoform X4

    Conserved Domains (2) summary
    COG4581
    Location:7591369
    Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
    cd18025
    Location:760937
    DEXHc_DDX60; DEXH-box helicase domain of DEAD box protein 60
  10. XM_039095172.1XP_038951100.1  probable ATP-dependent RNA helicase DDX60 isoform X5

    Conserved Domains (1) summary
    cd18025
    Location:760937
    DEXHc_DDX60; DEXH-box helicase domain of DEAD box protein 60
  11. XM_039095173.1XP_038951101.1  probable ATP-dependent RNA helicase DDX60 isoform X6

    Conserved Domains (1) summary
    cd18025
    Location:760937
    DEXHc_DDX60; DEXH-box helicase domain of DEAD box protein 60
  12. XM_039095174.1XP_038951102.1  probable ATP-dependent RNA helicase DDX60 isoform X7

    Conserved Domains (1) summary
    cd18025
    Location:760937
    DEXHc_DDX60; DEXH-box helicase domain of DEAD box protein 60
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