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Smim19 small integral membrane protein 19 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100362321, updated on 3-Apr-2024

Summary

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Official Symbol
Smim19provided by RGD
Official Full Name
small integral membrane protein 19provided by RGD
Primary source
RGD:2318364
See related
Ensembl:ENSRNOG00000024930 AllianceGenome:RGD:2318364
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be integral component of membrane. Orthologous to human SMIM19 (small integral membrane protein 19). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Heart (RPKM 141.7), Muscle (RPKM 126.4) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Smim19 in Genome Data Viewer
Location:
16q12.5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (76245838..76266786)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (69551507..69564323)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (74408085..74422070)

Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene voltage-dependent anion channel 3 like 1 Neighboring gene voltage-dependent anion channel 3 Neighboring gene solute carrier family 20 member 2 Neighboring gene uncharacterized LOC120097400 Neighboring gene mitochondrial ribosomal protein S31 Neighboring gene uncharacterized LOC120097532 Neighboring gene solute carrier family 25 member 15 Neighboring gene lncRNA derived from hepatocytes

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small integral membrane protein 19
Names
rCG43335-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001399377.1 → NP_001386306.1  small integral membrane protein 19

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000016
    UniProtKB/TrEMBL
    A6IW71
    Related
    ENSRNOP00000031728.7, ENSRNOT00000036506.7
    Conserved Domains (1) summary
    pfam15117
    Location:10 → 107
    UPF0697; Uncharacterized protein family UPF0697

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086034.1 Reference GRCr8

    Range
    76245838..76266786
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063274967.1 → XP_063131037.1  small integral membrane protein 19 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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