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Fam90a1a family with sequence similarity 90 member A1A [ Rattus norvegicus (Norway rat) ]

Gene ID: 100362477, updated on 29-Feb-2024

Summary

Official Symbol
Fam90a1aprovided by RGD
Official Full Name
family with sequence similarity 90 member A1Aprovided by RGD
Primary source
RGD:2318111
See related
Ensembl:ENSRNOG00000067448 AllianceGenome:RGD:2318111
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Fam90a1; Fam90a13p; Fam90a1-ps2
Summary
Orthologous to human FAM90A1 (family with sequence similarity 90 member A1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 2.3), Liver (RPKM 0.7) and 4 other tissues See more
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Genomic context

Location:
16q12.5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (76801218..76808469, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (70098439..70106147, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (75001033..75016173, complement)

Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 90, member A1 like 3 Neighboring gene family with sequence similarity 90, member A1 like 2 Neighboring gene family with sequence similarity 90, member A1 like 4 Neighboring gene defensin beta 13

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
protein FAM90A11; uncharacterized protein LOC100362477
Names
family with sequence similarity 90, member A1
family with sequence similarity 90, member A1-pseudogene 2
family with sequence similarity 90, member A13, pseudogene
putative protein FAM90A7P
putative protein FAM90A8P
rCG43168-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086034.1 Reference GRCr8

    Range
    76801218..76808469 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002728417.6XP_002728463.3  protein FAM90A11

    UniProtKB/TrEMBL
    A6IW92
    Related
    ENSRNOP00000096401.1
    Conserved Domains (1) summary
    pfam15288
    Location:3974
    zf-CCHC_6; Zinc knuckle