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rbm45 RNA binding motif protein 45 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100379755, updated on 8-Mar-2024

Summary

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Official Symbol
rbm45provided by Xenbase
Official Full Name
RNA binding motif protein 45provided by Xenbase
Primary source
Xenbase:XB-GENE-987235
See related
Ensembl:ENSXETG00000015007
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
drb1
Orthologs
human mouse all
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Genomic context

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See rbm45 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (64247420..64265042, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (59187325..59204427, complement)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101732779 Neighboring gene oxysterol binding protein like 6 Neighboring gene chimerin 1 Neighboring gene activating transcription factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RNA-binding protein 45

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    64247420..64265042 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002935680.5 → XP_002935726.1  RNA-binding protein 45 isoform X2

    UniProtKB/TrEMBL
    A0A8J0QLA3
    Conserved Domains (4) summary
    cd12366
    Location:17 → 97
    RRM1_RBM45; RNA recognition motif 1 in RNA-binding protein 45 (RBM45) and similar proteins
    cd12367
    Location:113 → 186
    RRM2_RBM45; RNA recognition motif 2 in RNA-binding protein 45 (RBM45) and similar proteins
    cd12368
    Location:245 → 317
    RRM3_RBM45; RNA recognition motif 3 in RNA-binding protein 45 (RBM45) and similar proteins
    cd12369
    Location:376 → 443
    RRM4_RBM45; RNA recognition motif 4 in RNA-binding protein 45 (RBM45) and similar proteins

  2. XM_002935681.5 → XP_002935727.1  RNA-binding protein 45 isoform X1

    UniProtKB/TrEMBL
    F7EFV3
    Related
    ENSXETP00000032820.4, ENSXETT00000032820.5
    Conserved Domains (4) summary
    cd12366
    Location:17 → 97
    RRM1_RBM45; RNA recognition motif 1 (RRM1) found in RNA-binding protein 45 (RBM45) and similar proteins
    cd12367
    Location:113 → 186
    RRM2_RBM45; RNA recognition motif 2 (RRM2) found in RNA-binding protein 45 (RBM45) and similar proteins
    cd12368
    Location:245 → 317
    RRM3_RBM45; RNA recognition motif 3 (RRM3) found in RNA-binding protein 45 (RBM45) and similar proteins
    cd12369
    Location:392 → 459
    RRM4_RBM45; RNA recognition motif 4 (RRM4) found in RNA-binding protein 45 (RBM45) and similar proteins

  3. XM_031892894.1 → XP_031748754.1  RNA-binding protein 45 isoform X1

    UniProtKB/TrEMBL
    F7EFV3
    Conserved Domains (4) summary
    cd12366
    Location:17 → 97
    RRM1_RBM45; RNA recognition motif 1 (RRM1) found in RNA-binding protein 45 (RBM45) and similar proteins
    cd12367
    Location:113 → 186
    RRM2_RBM45; RNA recognition motif 2 (RRM2) found in RNA-binding protein 45 (RBM45) and similar proteins
    cd12368
    Location:245 → 317
    RRM3_RBM45; RNA recognition motif 3 (RRM3) found in RNA-binding protein 45 (RBM45) and similar proteins
    cd12369
    Location:392 → 459
    RRM4_RBM45; RNA recognition motif 4 (RRM4) found in RNA-binding protein 45 (RBM45) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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