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POU5F1 POU class 5 homeobox 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100384946, updated on 8-Mar-2024

Summary

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Gene symbol
POU5F1
Gene description
POU class 5 homeobox 1
See related
Ensembl:ENSCJAG00000019789
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Also known as
OCT4
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 4 NC_071445.1 (33215983..33222467, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 4 NC_048386.1 (34347270..34353781, complement)

Chromosome 4 - NC_071445.1Genomic Context describing neighboring genes Neighboring gene psoriasis susceptibility 1 candidate 2 Neighboring gene psoriasis susceptibility 1 candidate 1 Neighboring gene coiled-coil alpha-helical rod protein 1 Neighboring gene transcription factor 19 Neighboring gene hereditary hemochromatosis protein homolog Neighboring gene uncharacterized LOC118153103

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. False-positive antibody signals for the pluripotency factor OCT4A (POU5F1) in testis-derived cells may lead to erroneous data and misinterpretations. Warthemann R, et al. Mol Hum Reprod, 2012 Dec. PMID 22933709, Free PMC Article
  2. Comparative genome analysis of the major histocompatibility complex (MHC) class I B/C segments in primates elucidated by genomic sequencing in common marmoset (Callithrix jacchus). Shiina T, et al. Immunogenetics, 2011 Aug. PMID 21505866
  3. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
POU domain, class 5, transcription factor 1
Names
POU domain containing class 5 transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001265584.1 → NP_001252513.1  POU domain, class 5, transcription factor 1

    See identical proteins and their annotated locations for NP_001252513.1

    Status: PROVISIONAL

    Source sequence(s)
    JQ627833
    UniProtKB/TrEMBL
    A0A8I3ZZA6, F6U7N9
    Related
    ENSCJAP00000036806.1, ENSCJAT00000038871.1
    Conserved Domains (2) summary
    smart00352
    Location:138 → 212
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:233 → 286
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071445.1 Reference mCalJa1.2.pat.X

    Range
    33215983..33222467 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035294650.2 → XP_035150541.1  POU domain, class 5, transcription factor 1 isoform X1

    UniProtKB/TrEMBL
    F6Q996
    Conserved Domains (2) summary
    pfam00046
    Location:37 → 91
    Homeobox; Homeobox domain
    cl22952
    Location:1 → 16
    Pou; Pou domain - N-terminal to homeobox domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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