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ACTN4 actinin alpha 4 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100467263, updated on 8-Mar-2024

Summary

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Gene symbol
ACTN4
Gene description
actinin alpha 4
Locus tag
PANDA_015468
See related
Ensembl:ENSAMEG00000009969
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
24
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 12 NC_048229.1 (37300829..37371852, complement)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218298.1 (46421..117143, complement)

Chromosome 12 - NC_048229.1Genomic Context describing neighboring genes Neighboring gene galectin 4 Neighboring gene calpain 12 Neighboring gene eukaryotic translation initiation factor 3 subunit K Neighboring gene mitogen-activated protein kinase kinase kinase kinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cortical actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-actinin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048229.1 Reference ASM200744v2 Primary Assembly

    Range
    37300829..37371852 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019806549.2 → XP_019662108.2  alpha-actinin-4 isoform X3

    UniProtKB/TrEMBL
    A0A7N5K413
    Related
    ENSAMEP00000022532.1, ENSAMET00000045277.1

  2. XM_002925838.4 → XP_002925884.2  alpha-actinin-4 isoform X1

    UniProtKB/TrEMBL
    A0A7N5P0D5, D2HTG8
    Related
    ENSAMEP00000023416.1, ENSAMET00000026081.1

  3. XM_034639204.1 → XP_034495095.1  alpha-actinin-4 isoform X2

    UniProtKB/TrEMBL
    D2HTG8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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