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plbd2 phospholipase B domain containing 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100491964, updated on 8-Mar-2024

Summary

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Official Symbol
plbd2provided by Xenbase
Official Full Name
phospholipase B domain containing 2provided by Xenbase
Primary source
Xenbase:XB-GENE-992746
See related
Ensembl:ENSXETG00000017657
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
p76
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (146217951..146234921, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (133757988..133774446, complement)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene LIM homeobox 5 Neighboring gene serine dehydratase like Neighboring gene serine dehydratase Neighboring gene solute carrier family 8 (sodium/lithium/calcium exchanger), member B1 Neighboring gene FIC domain containing

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables phospholipase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables phospholipase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within lipid catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in phospholipid catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in extracellular region IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
putative phospholipase B-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    146217951..146234921 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002939193.5 → XP_002939239.1  putative phospholipase B-like 2

    UniProtKB/TrEMBL
    A0A6I8SEG6, A0A6I8SJ03
    Related
    ENSXETP00000092226.2, ENSXETT00000079127.2
    Conserved Domains (1) summary
    pfam04916
    Location:6 → 545
    Phospholip_B; Phospholipase B
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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