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lyz lysozyme [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100492798, updated on 8-Mar-2024

Summary

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Official Symbol
lyzprovided by Xenbase
Official Full Name
lysozymeprovided by Xenbase
Primary source
Xenbase:XB-GENE-488433
See related
Ensembl:ENSXETG00000037293
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human all
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Genomic context

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See lyz in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (58860689..58864761)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (49427851..49432306)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene RAP1B, member of RAS oncogene family Neighboring gene nucleoporin 107kDa Neighboring gene YEATS domain containing 4 Neighboring gene cleavage and polyadenylation specific factor 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
  
enables lysozyme activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to bacterium IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within killing of cells of another organism IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within metabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
lysozyme C
Names
Lysozyme C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    58860689..58864761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002938507.4 → XP_002938553.2  lysozyme C

    UniProtKB/TrEMBL
    A0A6I8RID5
    Related
    ENSXETP00000081429.2, ENSXETT00000093658.2
    Conserved Domains (1) summary
    cd16897
    Location:20 → 147
    LYZ_C; C-type lysozyme
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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