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LOC100493121 myosin-4 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100493121, updated on 25-Jan-2024

Summary

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Official Symbol
LOC100493121provided by Xenbase
Official Full Name
myosin-4provided by Xenbase
Primary source
Xenbase:XB-GENE-29081519
See related
Ensembl:ENSXETG00000048804
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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Genomic context

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Location:
chromosome: 10
Exon count:
41
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 10 NC_030686.2 (50229763..50245800, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 10 NC_030686.1 (39609094..39622981, complement)

Chromosome 10 - NC_030686.2Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25-like Neighboring gene growth arrest specific 7 Neighboring gene myosin, heavy chain 7, cardiac muscle, beta Neighboring gene myosin-4-like Neighboring gene uncharacterized LOC116407980

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables actin binding IEA
Inferred from Electronic Annotation
more info
  
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
  
enables cytoskeletal motor activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in myofibril IEA
Inferred from Electronic Annotation
more info
  
part_of myosin complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
myosin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030686.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    50229763..50245800 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012954187.3 → XP_012809641.1  myosin-4

    UniProtKB/TrEMBL
    A0A6I8S8S6, A0A8J0SD97
    Related
    ENSXETP00000091206.2, ENSXETT00000068731.2
    Conserved Domains (8) summary
    cl22853
    Location:99 → 768
    Motor_domain; Myosin and Kinesin motor domain
    pfam00063
    Location:87 → 768
    Myosin_head; Myosin head (motor domain)
    pfam01576
    Location:848 → 1925
    Myosin_tail_1; Myosin tail
    pfam02736
    Location:35 → 72
    Myosin_N; Myosin N-terminal SH3-like domain
    cl00459
    Location:1297 → 1409
    MIT_CorA-like; metal ion transporter CorA-like divalent cation transporter superfamily
    cl19219
    Location:1154 → 1239
    DUF342; Protein of unknown function (DUF342)
    cl19764
    Location:1374 → 1535
    COG6; Conserved oligomeric complex COG6
    cl23720
    Location:963 → 1096
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
Nucleotide Protein Strain
Heading Accession and Version

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