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ube2d4 ubiquitin conjugating enzyme E2D 4 (putative) [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100497147, updated on 8-Mar-2024

Summary

Official Symbol
ube2d4provided by Xenbase
Official Full Name
ubiquitin conjugating enzyme E2D 4 (putative)provided by Xenbase
Primary source
Xenbase:XB-GENE-962537
See related
Ensembl:ENSXETG00000019014
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
HBUCE1; ube2d3.2
Orthologs
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Genomic context

See ube2d4 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (126696620..126711385, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (107529895..107544876)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene ELMO/CED-12 domain containing 3 Neighboring gene drebrin like Neighboring gene transcription factor 7 like 1 Neighboring gene trans-golgi network protein 2

Genomic regions, transcripts, and products

General protein information

Preferred Names
ubiquitin-conjugating enzyme E2 D4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    126696620..126711385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002932549.5XP_002932595.1  ubiquitin-conjugating enzyme E2 D4 isoform X2

    See identical proteins and their annotated locations for XP_002932595.1

    UniProtKB/TrEMBL
    B0JYU2, F6VCY8
    Related
    ENSXETP00000041238.3, ENSXETT00000041238.5
    Conserved Domains (1) summary
    cl00154
    Location:1146
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
  2. XM_012959439.3XP_012814893.1  ubiquitin-conjugating enzyme E2 D4 isoform X3

    See identical proteins and their annotated locations for XP_012814893.1

    UniProtKB/TrEMBL
    A0A8J0SG95, B0JYU2
    Conserved Domains (2) summary
    COG5078
    Location:1137
    COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
    cl00154
    Location:2136
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
  3. XM_004912568.4XP_004912625.1  ubiquitin-conjugating enzyme E2 D4 isoform X3

    See identical proteins and their annotated locations for XP_004912625.1

    UniProtKB/TrEMBL
    A0A8J0SG95, B0JYU2
    Conserved Domains (2) summary
    COG5078
    Location:1137
    COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
    cl00154
    Location:2136
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
  4. XM_012959438.3XP_012814892.1  ubiquitin-conjugating enzyme E2 D4 isoform X1

    UniProtKB/TrEMBL
    A0A803K2G6, B0JYU2
    Related
    ENSXETP00000114509.1, ENSXETT00000113773.1
    Conserved Domains (2) summary
    COG5078
    Location:21159
    COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
    cl00154
    Location:21158
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...