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chd2 chromodomain helicase DNA binding protein 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100497210, updated on 30-Sep-2021

Summary

Official Symbol
chd2provided by Xenbase
Official Full Name
chromodomain helicase DNA binding protein 2provided by Xenbase
Primary source
Xenbase:XB-GENE-950755
See related
EnsemblRapid:ENSXETG00000024129
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
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Genomic context

See chd2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
39
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (112466066..112512023)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (102473959..102520039)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116409780 Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 Neighboring gene family with sequence similarity 174 member B Neighboring gene repulsive guidance molecule BMP co-receptor a Neighboring gene multiple C2 domains, transmembrane 2

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
chromodomain-helicase-DNA-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    112466066..112512023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002933307.5XP_002933353.2  chromodomain-helicase-DNA-binding protein 2 isoform X1

    Related
    ENSXETP00000066202.2, ENSXETT00000067867.2
    Conserved Domains (6) summary
    PLN03142
    Location:4711005
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18661
    Location:379450
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:264346
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18054
    Location:467703
    DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
    pfam13907
    Location:14661548
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:11321220
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
  2. XM_018092472.2XP_017947961.2  chromodomain-helicase-DNA-binding protein 2 isoform X2

    Conserved Domains (6) summary
    PLN03142
    Location:4711005
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18661
    Location:379450
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:264346
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18054
    Location:467703
    DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
    pfam13907
    Location:14221504
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:11321220
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
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