U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

gldc glycine decarboxylase [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100497481, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
gldcprovided by Xenbase
Official Full Name
glycine decarboxylaseprovided by Xenbase
Primary source
Xenbase:XB-GENE-1221322
See related
Ensembl:ENSXETG00000000543
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
25
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (126758418..126784974)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (114520814..114547046)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type D Neighboring gene lysine (K)-specific demethylase 4C Neighboring gene ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase Neighboring gene bromodomain containing 10

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables glycine binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables glycine dehydrogenase (decarboxylating) activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables glycine dehydrogenase (decarboxylating) activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables pyridoxal phosphate binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within glycine catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in glycine decarboxylation via glycine cleavage system IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within glycine metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of glycine cleavage complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
glycine dehydrogenase (decarboxylating), mitochondrial
Names
glycine dehydrogenase (decarboxylating)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    126758418..126784974
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002934179.5 → XP_002934225.2  glycine dehydrogenase (decarboxylating), mitochondrial

    UniProtKB/TrEMBL
    A0A6I8QN58, A0A8J0QJH4
    Related
    ENSXETP00000069953.2, ENSXETT00000076035.2
    Conserved Domains (1) summary
    PRK05367
    Location:62 → 1013
    PRK05367; aminomethyl-transferring glycine dehydrogenase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Miscellaneous