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pdxdc1 pyridoxal-dependent decarboxylase domain containing 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100497493, updated on 30-Sep-2021

Summary

Official Symbol
pdxdc1provided by Xenbase
Official Full Name
pyridoxal-dependent decarboxylase domain containing 1provided by Xenbase
Primary source
Xenbase:XB-GENE-1005631
See related
EnsemblRapid:ENSXETG00000005533
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
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Genomic context

See pdxdc1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
23
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (34266432..34310669)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (28361814..28403902)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene meiosis regulator and mRNA stability factor 1 Neighboring gene bMERB domain containing 1 Neighboring gene posterior protein-like Neighboring gene N-terminal asparagine amidase Neighboring gene RRN3 homolog, RNA polymerase I transcription factor

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
pyridoxal-dependent decarboxylase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    34266432..34310669
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002937681.5XP_002937727.1  pyridoxal-dependent decarboxylase domain-containing protein 1

    Related
    ENSXETP00000077785.2, ENSXETT00000094540.2
    Conserved Domains (2) summary
    cl00057
    Location:608758
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl18945
    Location:205469
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
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