U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rrn3 RRN3 homolog, RNA polymerase I transcription factor [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100497648, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
rrn3provided by Xenbase
Official Full Name
RRN3 homolog, RNA polymerase I transcription factorprovided by Xenbase
Primary source
Xenbase:XB-GENE-990491
See related
Ensembl:ENSXETG00000005536
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See rrn3 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
18
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (34332377..34350903, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (28426509..28446365, complement)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene pyridoxal-dependent decarboxylase domain containing 1 Neighboring gene N-terminal asparagine amidase Neighboring gene uncharacterized LOC105948488 Neighboring gene ribosomal L1 domain containing 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA polymerase I general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
  
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within transcription initiation at RNA polymerase I promoter IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within translational initiation IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
RNA polymerase I-specific transcription initiation factor RRN3
Names
RRN3 RNA polymerase I transcription factor homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    34332377..34350903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004917953.4 → XP_004918010.1  RNA polymerase I-specific transcription initiation factor RRN3

    See identical proteins and their annotated locations for XP_004918010.1

    UniProtKB/TrEMBL
    A0A6I8QER1, A0A6I8SGJ8
    Related
    ENSXETP00000097398.2, ENSXETT00000087538.2
    Conserved Domains (1) summary
    pfam05327
    Location:31 → 550
    RRN3; RNA polymerase I specific transcription initiation factor RRN3

  2. XM_002937682.5 → XP_002937728.1  RNA polymerase I-specific transcription initiation factor RRN3

    See identical proteins and their annotated locations for XP_002937728.1

    UniProtKB/TrEMBL
    A0A6I8QER1, A0A6I8SGJ8
    Related
    ENSXETP00000071276.1, ENSXETT00000097291.2
    Conserved Domains (1) summary
    pfam05327
    Location:31 → 550
    RRN3; RNA polymerase I specific transcription initiation factor RRN3
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.