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4930453H23Rik RIKEN cDNA 4930453H23 gene [ Mus musculus (house mouse) ]

Gene ID: 100503481, updated on 8-Feb-2024

Summary

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Official Symbol
4930453H23Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930453H23 geneprovided by MGI
Primary source
MGI:MGI:1921933
See related
Ensembl:ENSMUSG00000087358 AllianceGenome:MGI:1921933
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 3.4) See more
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Genomic context

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Location:
X A2; X 16.63 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (21072819..21087904, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (21206580..21221665, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_46893 Neighboring gene STARR-seq mESC enhancer starr_46894 Neighboring gene predicted gene, 53272 Neighboring gene predicted gene 5932 Neighboring gene STARR-seq mESC enhancer starr_46895 Neighboring gene STARR-seq mESC enhancer starr_46896 Neighboring gene predicted gene 6938 Neighboring gene nucleolar and coiled-body phosphoprotein 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_169165.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AL671922
    Related
    ENSMUST00000125569.8

  2. NR_169166.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL671922
    Related
    ENSMUST00000178516.3

  3. NR_169167.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL671922

  4. NR_169168.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL671922

  5. NR_169169.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL671922

  6. NR_169170.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL671922

  7. NR_169171.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL671922
    Related
    ENSMUST00000155208.3

  8. NR_169172.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL671922

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    21072819..21087904 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001252013.1: Suppressed sequence

    Description
    NM_001252013.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
Nucleotide Protein Strain
Heading Accession and Version

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