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AY761185 cDNA sequence AY761185 [ Mus musculus (house mouse) ]

Gene ID: 100503970, updated on 16-Oct-2021

Summary

Official Symbol
AY761185provided by MGI
Official Full Name
cDNA sequence AY761185provided by MGI
Primary source
MGI:MGI:3630303
See related
Ensembl:ENSMUSG00000079120
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward genital fat pad adult (RPKM 1215.2) See more
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Genomic context

See AY761185 in Genome Data Viewer
Location:
8; 8 A2
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (21433710..21434764, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (20943694..20944748, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NT_166309.1 (7646..8700)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene defensin beta 33 Neighboring gene predicted gene 15056 Neighboring gene predicted gene 6040 Neighboring gene defensin, alpha, 21 Neighboring gene predicted gene, 23142

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Clone Names

  • MGC176264, MGC184468, MGC190356

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in antibacterial humoral response IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in antimicrobial humoral immune response mediated by antimicrobial peptide IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in cellular response to lipopolysaccharide IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in defense response to Gram-negative bacterium IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in defense response to Gram-positive bacterium IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in innate immune response in mucosa IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in membrane disruption in other organism IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in azurophil granule ISO
Inferred from Sequence Orthology
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in extracellular space ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
CRS4C-6
Names
defensin related cryptdin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012640.2NP_001012658.1  CRS4C-6 precursor

    See identical proteins and their annotated locations for NP_001012658.1

    Status: VALIDATED

    Source sequence(s)
    AC140205, AY761185
    Consensus CDS
    CCDS40263.1
    UniProtKB/TrEMBL
    Q5ERI8
    Related
    ENSMUSP00000106386.3, ENSMUST00000110758.4
    Conserved Domains (1) summary
    pfam00879
    Location:151
    Defensin_propep; Defensin propeptide

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    21433710..21434764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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