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Gm6040 predicted gene 6040 [ Mus musculus (house mouse) ]

Gene ID: 100503992, updated on 23-Jun-2021

Summary

Official Symbol
Gm6040provided by MGI
Official Full Name
predicted gene 6040provided by MGI
Primary source
MGI:MGI:3646527
See related
Ensembl:ENSMUSG00000071165
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Defb51; EG574083
Expression
Restricted expression toward genital fat pad adult (RPKM 13.0) See more
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Genomic context

See Gm6040 in Genome Data Viewer
Location:
8; 8 A2
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (21391976..21412114, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (20901960..20922098, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NT_166309.1 (30323..35906)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene defensin beta 48 pseudogene Neighboring gene proline rich 14-like pseudogene Neighboring gene defensin beta 33 Neighboring gene predicted gene 15056 Neighboring gene cDNA sequence AY761185 Neighboring gene defensin, alpha, 21

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Clone Names

  • MGC170791

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025353.2NP_001020524.1  beta-defensin 51 precursor

    See identical proteins and their annotated locations for NP_001020524.1

    Status: VALIDATED

    Source sequence(s)
    AK136644
    Consensus CDS
    CCDS40262.1
    UniProtKB/TrEMBL
    Q4QY32
    Related
    ENSMUSP00000093080.4, ENSMUST00000095430.4

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    21391976..21412114 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001778383.2 RNA Sequence

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