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RBM26-AS1 RBM26 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100505538, updated on 10-Oct-2023

Summary

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Official Symbol
RBM26-AS1provided by HGNC
Official Full Name
RBM26 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:39805
See related
Ensembl:ENSG00000227354 AllianceGenome:HGNC:39805
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.9), ovary (RPKM 1.3) and 24 other tissues See more
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Genomic context

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Location:
13q31.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (79406309..79424336)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (78634378..78652330)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (79980444..79998471)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5425 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7850 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7851 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7852 Neighboring gene BCAS2 pseudogene 3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:79772046-79772677 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7853 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7854 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7855 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:79853422-79854140 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:79857373-79858352 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:79862351-79862939 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:79881601-79882102 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:79904806-79905306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:79905307-79905807 Neighboring gene RNA binding motif protein 26 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7856 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7857 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:79980055-79981046 Neighboring gene RNA, 5S ribosomal pseudogene 33 Neighboring gene uncharacterized LOC105370274 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5427 Neighboring gene NDFIP2 antisense RNA 1 Neighboring gene Nedd4 family interacting protein 2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr13:80134686-80135885 Neighboring gene long intergenic non-protein coding RNA 1068

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • RBM26 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038991.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK002196, AL139006, BC034812
    Related
    ENST00000606049.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    79406309..79424336
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    78634378..78652330
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases