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LINC01176 long intergenic non-protein coding RNA 1176 [ Homo sapiens (human) ]

Gene ID: 100506516, updated on 10-Oct-2023

Summary

Official Symbol
LINC01176provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1176provided by HGNC
Primary source
HGNC:HGNC:49548
See related
Ensembl:ENSG00000281404 AllianceGenome:HGNC:49548
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in skin (RPKM 4.3), bone marrow (RPKM 1.6) and 24 other tissues See more
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Genomic context

See LINC01176 in Genome Data Viewer
Location:
7p14.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (30390885..30404055)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (30528585..30541749)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (30430501..30443671)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene microRNA 550a-1 Neighboring gene microRNA 550b-1 Neighboring gene zinc and ring finger 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:30358457-30358625 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25810 Neighboring gene Sharpr-MPRA regulatory region 6335 Neighboring gene uncharacterized protein DKFZp586I1420 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr7:30430683-30431301 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25811 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:30459231-30459834 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25812 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18066 Neighboring gene nucleotide binding oligomerization domain containing 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:30489142-30489642 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:30517896-30518640 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:30543653-30544532 Neighboring gene gamma-glutamylcyclotransferase

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_108081.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006027, BM981427
    Related
    ENST00000628121.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    30390885..30404055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    30528585..30541749
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)