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LINC02876 long intergenic non-protein coding RNA 2876 [ Homo sapiens (human) ]

Gene ID: 100506650, updated on 8-Mar-2024

Summary

Official Symbol
LINC02876provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2876provided by HGNC
Primary source
HGNC:HGNC:42963
See related
Ensembl:ENSG00000227011 AllianceGenome:HGNC:42963
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C17orf112
Expression
Restricted expression toward testis (RPKM 3.7) See more
Orthologs
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Genomic context

Location:
17q22
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (52985505..52987652)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (53860727..53862875)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (51062865..51065012)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2089 Neighboring gene uncharacterized LOC107984983 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:51123434-51123934 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:51138562-51139451 Neighboring gene MT-CO1 pseudogene 40 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr17:51219872-51220372 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr17:51220373-51220873 Neighboring gene phosphatidylinositol 4-kinase type 2 alpha pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_164143.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC102948
    Related
    ENST00000623702.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    52985505..52987652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    53860727..53862875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)