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LOC100507002 uncharacterized LOC100507002 [ Homo sapiens (human) ]

Gene ID: 100507002, updated on 10-Oct-2023

Summary

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Gene symbol
LOC100507002
Gene description
uncharacterized LOC100507002
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in colon (RPKM 2.5), endometrium (RPKM 2.3) and 23 other tissues See more
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Genomic context

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Location:
17q24.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (65100812..65111095)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (65970764..65981054)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (63096930..63107213)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:63023805-63024744 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:63024745-63025684 Neighboring gene NANOG hESC enhancer GRCh37_chr17:63043783-63044416 Neighboring gene G protein subunit alpha 13 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8858 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8859 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:63059883-63060849 Neighboring gene uncharacterized LOC105371864 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8860 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:63118742-63119273 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:63119274-63119804 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8861 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12607 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8862 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12608 Neighboring gene VISTA enhancer hs1517 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:63169068-63169861 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12609 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:63179396-63179932 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:63179933-63180469 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:63182097-63182620 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:63181573-63182096 Neighboring gene regulator of G protein signaling 9 Neighboring gene zinc finger protein 848, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:63220448-63221252 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:63221253-63222057 Neighboring gene MPRA-validated peak2941 silencer Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr17:63358670-63359869 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:63434615-63435115 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:63451995-63452494 Neighboring gene long intergenic non-protein coding RNA 2563

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110801.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC015821

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    65100812..65111095
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    65970764..65981054
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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