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MTMR7 myotubularin related protein 7 [ Sus scrofa (pig) ]

Gene ID: 100516469, updated on 8-Mar-2024

Summary

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Official Symbol
MTMR7provided by VGNC
Official Full Name
myotubularin related protein 7provided by VGNC
Primary source
VGNC:VGNC:108726
See related
Ensembl:ENSSSCG00000036785
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 9.0), kidney (RPKM 4.3) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (5007560..5122367, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (5450626..5606130, complement)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex subunit 7 Neighboring gene VPS37A subunit of ESCRT-I Neighboring gene uncharacterized LOC110257467 Neighboring gene uncharacterized LOC110257468 Neighboring gene solute carrier family 7 member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: myotubularin-related protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    5007560..5122367 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003134197.6 → XP_003134245.4  LOW QUALITY PROTEIN: myotubularin-related protein 7

    UniProtKB/TrEMBL
    A0A8D1QNM8
    Related
    ENSSSCP00000044589.2, ENSSSCT00000059887.3
    Conserved Domains (2) summary
    cd13344
    Location:1 → 103
    PH-GRAM_MTMR7; Myotubularian (MTM) related 7 protein (MTMR7) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    pfam06602
    Location:129 → 448
    Myotub-related; Myotubularin-like phosphatase domain
Nucleotide Protein
Heading Accession and Version

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