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CTTNBP2 cortactin binding protein 2 [ Sus scrofa (pig) ]

Gene ID: 100517505, updated on 8-Mar-2024

Summary

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Official Symbol
CTTNBP2provided by VGNC
Official Full Name
cortactin binding protein 2provided by VGNC
Primary source
VGNC:VGNC:110293
See related
Ensembl:ENSSSCG00000016625
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
CORTBP2
Expression
Broad expression in kidney (RPKM 7.6), mixtures (RPKM 2.3) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CTTNBP2 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
28
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 18 NC_010460.4 (28130213..28573166)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 18 NC_010460.3 (30230103..30342035)

Chromosome 18 - NC_010460.4Genomic Context describing neighboring genes Neighboring gene ADP-sugar pyrophosphatase pseudogene Neighboring gene ankyrin repeat domain 7 Neighboring gene LSM8 homolog, U6 small nuclear RNA associated Neighboring gene CF transmembrane conductance regulator Neighboring gene ankyrin repeat, SAM and basic leucine zipper domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Comparative analyses of multi-species sequences from targeted genomic regions. Thomas JW, et al. Nature, 2003 Aug 14. PMID 12917688

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of synapse organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cortactin-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010460.4 Reference Sscrofa11.1 Primary Assembly

    Range
    28130213..28573166
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021078653.1 → XP_020934312.1  cortactin-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8D1CQI3
    Conserved Domains (6) summary
    COG0666
    Location:749 → 943
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:848 → 973
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:886 → 917
    ANK; ANK repeat [structural motif]
    pfam09727
    Location:145 → 289
    CortBP2; Cortactin-binding protein-2
    cl25732
    Location:236 → 380
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26464
    Location:380 → 823
    Atrophin-1; Atrophin-1 family

  2. XM_021078654.1 → XP_020934313.1  cortactin-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8D0Y3A0
    Conserved Domains (6) summary
    COG0666
    Location:659 → 853
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:758 → 883
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:796 → 827
    ANK; ANK repeat [structural motif]
    pfam09727
    Location:55 → 199
    CortBP2; Cortactin-binding protein-2
    cl25732
    Location:135 → 290
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26464
    Location:290 → 733
    Atrophin-1; Atrophin-1 family

  3. XM_021078656.1 → XP_020934315.1  cortactin-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8D0TX83
    Conserved Domains (6) summary
    COG0666
    Location:598 → 792
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:697 → 822
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:735 → 766
    ANK; ANK repeat [structural motif]
    pfam09727
    Location:1 → 138
    CortBP2; Cortactin-binding protein-2
    cl25732
    Location:69 → 229
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26464
    Location:229 → 672
    Atrophin-1; Atrophin-1 family

  4. XM_021078655.1 → XP_020934314.1  cortactin-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A4X1W2G3, F1SJF2
    Related
    ENSSSCP00000017609.3, ENSSSCT00000018099.5
    Conserved Domains (6) summary
    COG0666
    Location:640 → 834
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:739 → 864
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:777 → 808
    ANK; ANK repeat [structural motif]
    pfam09727
    Location:36 → 180
    CortBP2; Cortactin-binding protein-2
    cl25732
    Location:116 → 271
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26464
    Location:271 → 714
    Atrophin-1; Atrophin-1 family

  5. XM_021078657.1 → XP_020934316.1  cortactin-binding protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A8D1QVC6, Q2QLD4
    Conserved Domains (5) summary
    COG0666
    Location:500 → 694
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:599 → 724
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:637 → 668
    ANK; ANK repeat [structural motif]
    cl25732
    Location:1 → 131
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26464
    Location:131 → 574
    Atrophin-1; Atrophin-1 family

RNA

  1. XR_002340261.1 RNA Sequence

  2. XR_002340262.1 RNA Sequence

Nucleotide Protein
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