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CANX calnexin [ Sus scrofa (pig) ]

Gene ID: 100519184, updated on 27-Jun-2020

Summary

Official Symbol
CANXprovided by VGNC
Official Full Name
calnexinprovided by VGNC
Primary source
VGNC:VGNC:86167
See related
Ensembl:ENSSSCG00000014020
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 171.0), lung (RPKM 115.7) and 8 other tissues See more
Orthologs
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Genomic context

See CANX in Genome Data Viewer
Location:
chromosome: 2
Exon count:
16
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (78879031..78915828, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (80445609..80482509, complement)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106507308 Neighboring gene leukotriene C4 synthase Neighboring gene mastermind like transcriptional coactivator 1 Neighboring gene chibby family member 3 Neighboring gene heterogeneous nuclear ribonucleoprotein H1

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243210.1NP_001230139.1  calnexin precursor

    Status: VALIDATED

    Source sequence(s)
    AK236390, BQ603326, CV871773, DN112052, EW321024, EW324014, FS689653
    Related
    ENSSSCP00000048577.2, ENSSSCT00000063958.2
    Conserved Domains (1) summary
    pfam00262
    Location:72441
    Calreticulin; Calreticulin family

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    78879031..78915828 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021079153.1XP_020934812.1  calnexin isoform X1

    Related
    ENSSSCP00000034670.2, ENSSSCT00000040961.2
    Conserved Domains (1) summary
    pfam00262
    Location:72441
    Calreticulin; Calreticulin family
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