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TBX5 T-box transcription factor 5 [ Sus scrofa (pig) ]

Gene ID: 100522280, updated on 27-Jun-2020

Summary

Official Symbol
TBX5provided by VGNC
Official Full Name
T-box transcription factor 5provided by VGNC
Primary source
VGNC:VGNC:93804
See related
Ensembl:ENSSSCG00000009867
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in lung (RPKM 18.2), heart (RPKM 11.8) and 1 other tissue See more
Orthologs
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Genomic context

See TBX5 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (37772205..37826015)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (40161963..40260936)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene zinc finger and SCAN domain-containing protein 21-like Neighboring gene T-box transcription factor 3 Neighboring gene uncharacterized LOC106505937 Neighboring gene RNA binding motif protein 19 Neighboring gene cytochrome c oxidase subunit 7C, mitochondrial pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General gene information

Markers

Homology

General protein information

Preferred Names
T-box transcription factor TBX5
Names
T-box 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    37772205..37826015
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013982915.2XP_013838369.1  T-box transcription factor TBX5 isoform X3

    Conserved Domains (1) summary
    cd00182
    Location:53241
    TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...
  2. XM_013982910.2XP_013838364.1  T-box transcription factor TBX5 isoform X1

    Conserved Domains (1) summary
    cd00182
    Location:69257
    TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...
  3. XM_013982911.2XP_013838365.1  T-box transcription factor TBX5 isoform X2

    UniProtKB/TrEMBL
    F1RKD2
    Related
    ENSSSCP00000010532.3, ENSSSCT00000010815.3
    Conserved Domains (1) summary
    cd00182
    Location:69257
    TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...
  4. XM_013982912.2XP_013838366.1  T-box transcription factor TBX5 isoform X3

    Related
    ENSSSCP00000054910.1, ENSSSCT00000050467.2
    Conserved Domains (1) summary
    cd00182
    Location:53241
    TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...
  5. XM_021072761.1XP_020928420.1  T-box transcription factor TBX5 isoform X3

    Conserved Domains (1) summary
    cd00182
    Location:53241
    TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...
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