Format

Send to:

Choose Destination

LHFPL2 LHFPL tetraspan subfamily member 2 [ Sus scrofa (pig) ]

Gene ID: 100523234, updated on 27-Jun-2020

Summary

Official Symbol
LHFPL2provided by VGNC
Official Full Name
LHFPL tetraspan subfamily member 2provided by VGNC
Primary source
VGNC:VGNC:89705
See related
Ensembl:ENSSSCG00000028536
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 14.8), lung (RPKM 4.8) and 8 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LHFPL2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (87321119..87498686, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (88879254..88970752)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 3 subunit beta 1 Neighboring gene 40S ribosomal protein SA pseudogene Neighboring gene secretory carrier membrane protein 1 Neighboring gene arylsulfatase B Neighboring gene uncharacterized LOC110259406 Neighboring gene uncharacterized LOC110259405

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General protein information

Preferred Names
LHFPL tetraspan subfamily member 2 protein; lipoma HMGIC fusion partner-like 2 protein

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243213.1NP_001230142.1  LHFPL tetraspan subfamily member 2 protein

    Status: PROVISIONAL

    Source sequence(s)
    AK348362
    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HGMIC_fpl; Lipoma HMGIC fusion partner-like protein

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    87321119..87498686 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021079510.1XP_020935169.1  lipoma HMGIC fusion partner-like 2 protein isoform X1

    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  2. XM_021079511.1XP_020935170.1  lipoma HMGIC fusion partner-like 2 protein isoform X1

    Related
    ENSSSCP00000032311.1, ENSSSCT00000063226.2
    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  3. XM_021079527.1XP_020935186.1  lipoma HMGIC fusion partner-like 2 protein isoform X1

    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  4. XM_021079502.1XP_020935161.1  lipoma HMGIC fusion partner-like 2 protein isoform X1

    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  5. XM_021079487.1XP_020935146.1  lipoma HMGIC fusion partner-like 2 protein isoform X1

    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  6. XM_021079514.1XP_020935173.1  lipoma HMGIC fusion partner-like 2 protein isoform X1

    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  7. XM_021079469.1XP_020935128.1  lipoma HMGIC fusion partner-like 2 protein isoform X1

    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  8. XM_021079500.1XP_020935159.1  lipoma HMGIC fusion partner-like 2 protein isoform X1

    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  9. XM_021079476.1XP_020935135.1  lipoma HMGIC fusion partner-like 2 protein isoform X1

    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  10. XM_021079473.1XP_020935132.1  lipoma HMGIC fusion partner-like 2 protein isoform X1

    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  11. XM_021079479.1XP_020935138.1  lipoma HMGIC fusion partner-like 2 protein isoform X1

    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  12. XM_021079489.1XP_020935148.1  lipoma HMGIC fusion partner-like 2 protein isoform X1

    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  13. XM_021079478.1XP_020935137.1  lipoma HMGIC fusion partner-like 2 protein isoform X1

    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  14. XM_021079518.1XP_020935177.1  lipoma HMGIC fusion partner-like 2 protein isoform X1

    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  15. XM_021079483.1XP_020935142.1  lipoma HMGIC fusion partner-like 2 protein isoform X1

    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  16. XM_021079530.1XP_020935189.1  lipoma HMGIC fusion partner-like 2 protein isoform X1

    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  17. XM_021079488.1XP_020935147.1  lipoma HMGIC fusion partner-like 2 protein isoform X1

    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  18. XM_021079494.1XP_020935153.1  lipoma HMGIC fusion partner-like 2 protein isoform X1

    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
  19. XM_021079492.1XP_020935151.1  lipoma HMGIC fusion partner-like 2 protein isoform X1

    Conserved Domains (1) summary
    pfam10242
    Location:9204
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein
Support Center