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pfn2 profilin 2 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528281, updated on 15-Dec-2018

Summary

Gene symbol
pfn2
Gene description
profilin 2
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
prof2
Orthologs

Genomic context

See pfn2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
100 current IpCoco_1.2 (GCF_001660625.1) 7 NC_030422.1 (9544392..9549687, complement)

Chromosome 7 - NC_030422.1Genomic Context describing neighboring genes Neighboring gene protein crumbs homolog 1-like Neighboring gene alpha-2-HS-glycoprotein-like Neighboring gene TSC22 domain family member 2 Neighboring gene UAP56-interacting factor-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_030422.1 Chromosome 7 Reference IpCoco_1.2 Primary Assembly

Pathways from BioSystems

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200551.1NP_001187480.1  profilin-2

    See identical proteins and their annotated locations for NP_001187480.1

    Status: PROVISIONAL

    Source sequence(s)
    GU588740
    UniProtKB/TrEMBL
    E3TEF8
    Conserved Domains (1) summary
    smart00392
    Location:1139
    PROF; Profilin

RefSeqs of Annotated Genomes: Ictalurus punctatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IpCoco_1.2 Primary Assembly

Genomic

  1. NC_030422.1 Reference IpCoco_1.2 Primary Assembly

    Range
    9544392..9549687 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017470969.1XP_017326458.1  profilin-2 isoform X1

    UniProtKB/TrEMBL
    A0A2D0R791
    Conserved Domains (1) summary
    smart00392
    Location:1139
    PROF; Profilin
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