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pfn2a profilin 2a [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528281, updated on 8-Mar-2024

Summary

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Gene symbol
pfn2a
Gene description
profilin 2a
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
pfn2; pfn2l; prof2
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 7 NC_030422.2 (11310717..11317361, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 7 NC_030422.1 (9543066..9549694, complement)

Chromosome 7 - NC_030422.2Genomic Context describing neighboring genes Neighboring gene protein crumbs homolog 1 Neighboring gene alpha-2-HS-glycoprotein 2 Neighboring gene TSC22 domain family 2 Neighboring gene UAP56-interacting factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of actin filament polymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
profilin 2a
Names
profilin 2 like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200551.1 → NP_001187480.1  profilin 2a

    See identical proteins and their annotated locations for NP_001187480.1

    Status: PROVISIONAL

    Source sequence(s)
    GU588740
    UniProtKB/TrEMBL
    E3TEF8
    Conserved Domains (1) summary
    smart00392
    Location:1 → 139
    PROF; Profilin

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030422.2 Reference Coco_2.0 Primary Assembly

    Range
    11310717..11317361 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047156346.2 → XP_047012302.1  profilin 2a isoform X1

    UniProtKB/TrEMBL
    A0A979EWX4

  2. XM_047156347.2 → XP_047012303.1  profilin 2a isoform X2

    UniProtKB/TrEMBL
    E3TEF8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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