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MIR4689 microRNA 4689 [ Homo sapiens (human) ]

Gene ID: 100616421, updated on 6-Nov-2023

Summary

Official Symbol
MIR4689provided by HGNC
Official Full Name
microRNA 4689provided by HGNC
Primary source
HGNC:HGNC:41895
See related
Ensembl:ENSG00000264101 miRBase:MI0017322; AllianceGenome:HGNC:41895
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
mir-4689
Summary
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
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Genomic context

Location:
1p36.31
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (5862672..5862741, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (5386902..5386971, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (5922732..5922801, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD66 Neighboring gene uncharacterized LOC124903830 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:5778898-5779859 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:5800808-5801308 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:5801309-5801809 Neighboring gene AJAP1-NPHP4 intergenic nontranscribed DNase I hypersensitive site-defined enhancer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:5805858-5806654 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:5814163-5814801 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:5815304-5815502 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:5826901-5827548 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr1:5827549-5828196 and GRCh37_chr1:5828197-5828844 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:5857583-5858292 Neighboring gene NANOG hESC enhancer GRCh37_chr1:5883532-5884116 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5886314-5886814 Neighboring gene Sharpr-MPRA regulatory region 9093 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:5891751-5892261 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:5896941-5897093 Neighboring gene MPRA-validated peak24 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5910393-5910894 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5910895-5911394 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5913107-5913951 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5917575-5918327 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5918328-5919080 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5939868-5940372 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:5956455-5957256 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:5957257-5958056 Neighboring gene nephrocystin 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5968773-5969298 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5979954-5980454 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5999651-6000151 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6004026-6004526 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:6009504-6009801 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6027103-6027602 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6031677-6032176 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:6051054-6051908 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 133 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 134 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 135 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 136 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 70 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6059331-6060045 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6060046-6060760 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6062904-6063618 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6068670-6069262 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6070973-6071474 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6072741-6073242 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:6084854-6085618 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 71 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:6086382-6087145 Neighboring gene potassium voltage-gated channel subfamily A regulatory beta subunit 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 73 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 74 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6113495-6113995 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6120127-6120627 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:6133526-6134725 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:6143081-6143561 Neighboring gene uncharacterized LOC124903831

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_039838.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AL356693
    Related
    ENST00000582517.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    5862672..5862741 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    5386902..5386971 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)