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PFN2 profilin 2 [ Sus scrofa (pig) ]

Gene ID: 100621523, updated on 8-Mar-2024

Summary

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Official Symbol
PFN2provided by VGNC
Official Full Name
profilin 2provided by VGNC
Primary source
VGNC:VGNC:91339
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 44.9), kidney (RPKM 44.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (90177534..90185978, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (98231651..98237664, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102162381 Neighboring gene COMM domain containing 2 Neighboring gene ankyrin repeat and ubiquitin domain containing 1 Neighboring gene ring finger protein 13 Neighboring gene uncharacterized LOC110256536 Neighboring gene uncharacterized LOC102163150

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of actin filament polymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
profilin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    90177534..90185978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003358607.4 → XP_003358655.1  profilin-2 isoform X2

    See identical proteins and their annotated locations for XP_003358655.1

    UniProtKB/TrEMBL
    A0A8D1NJ53
    Conserved Domains (1) summary
    smart00392
    Location:2 → 139
    PROF; Profilin

  2. XM_005654030.3 → XP_005654087.1  profilin-2 isoform X1

    See identical proteins and their annotated locations for XP_005654087.1

    UniProtKB/TrEMBL
    A0A4X1SZN9, A0A8D1NJ53
    Conserved Domains (1) summary
    smart00392
    Location:2 → 140
    PROF; Profilin
Nucleotide Protein
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