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MS4A1 membrane spanning 4-domains A1 [ Sus scrofa (pig) ]

Gene ID: 100627952, updated on 8-Mar-2024

Summary

Official Symbol
MS4A1provided by VGNC
Official Full Name
membrane spanning 4-domains A1provided by VGNC
Primary source
VGNC:VGNC:90406
See related
Ensembl:ENSSSCG00000021812
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in spleen (RPKM 73.5) and mixtures (RPKM 10.3) See more
Orthologs
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Genomic context

Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (11216238..11229060, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (10774975..10787878, complement)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene membrane spanning 4-domains A12 Neighboring gene nuclear nucleic acid-binding protein C1D pseudogene Neighboring gene membrane spanning 4-domains A4A Neighboring gene membrane spanning 4-domains A5 Neighboring gene membrane spanning 4-domains A14

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General protein information

Preferred Names
B-lymphocyte antigen CD20
Names
membrane-spanning 4-domains, subfamily A, member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243394.1NP_001230323.1  B-lymphocyte antigen CD20

    Status: VALIDATED

    Source sequence(s)
    FP325135
    UniProtKB/TrEMBL
    A0A8D0RYP2, A0A8D0YCM1, A0A8D1EJN7
    Related
    ENSSSCP00000080062.1, ENSSSCT00000100371.1
    Conserved Domains (1) summary
    pfam04103
    Location:51216
    CD20; CD20-like family

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    11216238..11229060 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)