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TRIM27 tripartite motif containing 27 [ Canis lupus familiaris (dog) ]

Gene ID: 100685827, updated on 8-Mar-2024

Summary

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Official Symbol
TRIM27provided by VGNC
Official Full Name
tripartite motif containing 27provided by VGNC
Primary source
VGNC:VGNC:97226
See related
Ensembl:ENSCAFG00845017678
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 35
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 35 NC_051839.1 (26199826..26217843, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 35 NC_006617.4 (25777587..25795612, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 35 NC_049256.1 (27389980..27408261, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 35 NC_049295.1 (25862428..25880441, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 35 NC_049776.1 (25918116..25936647, complement)

Chromosome 35 - NC_051839.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119867723 Neighboring gene transfer RNA leucine (anticodon CAA) Neighboring gene uncharacterized LOC111094032 Neighboring gene uncharacterized LOC102156009 Neighboring gene transfer RNA leucine (anticodon CAA) Neighboring gene transfer RNA glutamine (anticodon CUG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of viral transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein RFP

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051839.1 Reference ROS_Cfam_1.0

    Range
    26199826..26217843 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038446650.1 → XP_038302578.1  zinc finger protein RFP

    UniProtKB/TrEMBL
    A0A8C0QUB9, A0A8C0S7D2, A0A8I3NT59, A0A8I3P197, A0A8P0SH05
    Related
    ENSCAFP00845024493.1, ENSCAFT00845031290.1
    Conserved Domains (4) summary
    COG1196
    Location:140 → 312
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd15814
    Location:315 → 491
    SPRY_PRY_TRIM27; PRY/SPRY domain in tripartite motif-containing protein 27 (TRIM27), also known as RING finger protein 76 (RNF76)
    cd16594
    Location:13 → 57
    RING-HC_TRIM11_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins, TRIM11 and TRIM27, and similar proteins
    cd19762
    Location:94 → 137
    Bbox2_TRIM7-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins TRIM7, TRIM27 and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049295.1 Alternate UMICH_Zoey_3.1

    Range
    25862428..25880441 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038520777.1 → XP_038376705.1  zinc finger protein RFP

    Conserved Domains (4) summary
    COG1196
    Location:140 → 312
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd15814
    Location:315 → 491
    SPRY_PRY_TRIM27; PRY/SPRY domain in tripartite motif-containing protein 27 (TRIM27), also known as RING finger protein 76 (RNF76)
    cd16594
    Location:13 → 57
    RING-HC_TRIM11_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins, TRIM11 and TRIM27, and similar proteins
    cd19762
    Location:94 → 137
    Bbox2_TRIM7-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins TRIM7, TRIM27 and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049776.1 Alternate UNSW_CanFamBas_1.0

    Range
    25918116..25936647 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038648858.1 → XP_038504786.1  zinc finger protein RFP

    Conserved Domains (4) summary
    COG1196
    Location:140 → 312
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd15814
    Location:315 → 491
    SPRY_PRY_TRIM27; PRY/SPRY domain in tripartite motif-containing protein 27 (TRIM27), also known as RING finger protein 76 (RNF76)
    cd16594
    Location:13 → 57
    RING-HC_TRIM11_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins, TRIM11 and TRIM27, and similar proteins
    cd19762
    Location:94 → 137
    Bbox2_TRIM7-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins TRIM7, TRIM27 and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049256.1 Alternate UU_Cfam_GSD_1.0

    Range
    27389980..27408261 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038584454.1 → XP_038440382.1  zinc finger protein RFP

    UniProtKB/TrEMBL
    A0A8C0QUB9, A0A8C0S7D2, A0A8I3NT59, A0A8I3P197, A0A8P0SH05
    Conserved Domains (4) summary
    COG1196
    Location:140 → 312
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd15814
    Location:315 → 491
    SPRY_PRY_TRIM27; PRY/SPRY domain in tripartite motif-containing protein 27 (TRIM27), also known as RING finger protein 76 (RNF76)
    cd16594
    Location:13 → 57
    RING-HC_TRIM11_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins, TRIM11 and TRIM27, and similar proteins
    cd19762
    Location:94 → 137
    Bbox2_TRIM7-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins TRIM7, TRIM27 and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006617.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    25777587..25795612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005642447.2 → XP_005642504.2  zinc finger protein RFP

    UniProtKB/TrEMBL
    A0A8C0QUB9, A0A8C0S7D2, A0A8I3NT59, A0A8I3P197, A0A8P0SH05
    Conserved Domains (4) summary
    COG1196
    Location:140 → 312
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd15814
    Location:315 → 491
    SPRY_PRY_TRIM27; PRY/SPRY domain in tripartite motif-containing protein 27 (TRIM27), also known as RING finger protein 76 (RNF76)
    cd16594
    Location:13 → 57
    RING-HC_TRIM11_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins, TRIM11 and TRIM27, and similar proteins
    cd19762
    Location:94 → 137
    Bbox2_TRIM7-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins TRIM7, TRIM27 and similar proteins
Nucleotide Protein
Heading Accession and Version

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