U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

exoc6 exocyst complex component 6 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100695951, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
exoc6
Gene description
exocyst complex component 6
See related
Ensembl:ENSONIG00000007244
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in testis (RPKM 1.7), brain (RPKM 1.2) and 8 other tissues See more
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See exoc6 in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
26
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG8 NC_031973.2 (28283760..28338071, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG8 NC_031973.1 (29302373..29357356, complement)

Linkage Group LG8 - NC_031973.2Genomic Context describing neighboring genes Neighboring gene jumonji domain containing 1Cb Neighboring gene cytochrome P450 26A1 Neighboring gene zinc finger protein 862-like Neighboring gene hematopoietically expressed homeobox Neighboring gene TruB pseudouridine (psi) synthase family member 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Transcriptome profiling and digital gene expression analysis of Nile tilapia (Oreochromis niloticus) infected by Streptococcus agalactiae. Zhang R, et al. Mol Biol Rep, 2013 Oct. PMID 24068429

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in Golgi to plasma membrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle tethering involved in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of exocyst IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
exocyst complex component 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031973.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    28283760..28338071 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005471222.4 → XP_005471279.1  exocyst complex component 6 isoform X5

    UniProtKB/TrEMBL
    A0A669CIF7
    Conserved Domains (1) summary
    pfam04091
    Location:471 → 777
    Sec15; Exocyst complex subunit Sec15-like

  2. XM_025909610.1 → XP_025765395.1  exocyst complex component 6 isoform X2

    UniProtKB/TrEMBL
    A0A669CIF7
    Conserved Domains (1) summary
    pfam04091
    Location:471 → 787
    Sec15; Exocyst complex subunit Sec15-like

  3. XM_025909611.1 → XP_025765396.1  exocyst complex component 6 isoform X3

    UniProtKB/TrEMBL
    A0A669BS59, I3JJT9
    Related
    ENSONIP00000009133.2, ENSONIT00000009138.2
    Conserved Domains (1) summary
    pfam04091
    Location:472 → 788
    Sec15; Exocyst complex subunit Sec15-like

  4. XM_005471223.4 → XP_005471280.1  exocyst complex component 6 isoform X6

    UniProtKB/TrEMBL
    A0A669BS59
    Related
    ENSONIP00000058931.1, ENSONIT00000037499.1
    Conserved Domains (1) summary
    pfam04091
    Location:472 → 778
    Sec15; Exocyst complex subunit Sec15-like

  5. XM_019362136.2 → XP_019217681.1  exocyst complex component 6 isoform X1

    UniProtKB/TrEMBL
    A0A669BS59

  6. XM_005471221.4 → XP_005471278.1  exocyst complex component 6 isoform X4

    UniProtKB/TrEMBL
    A0A669BS59
    Conserved Domains (1) summary
    pfam04091
    Location:472 → 778
    Sec15; Exocyst complex subunit Sec15-like
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.