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Pdxdc1 pyridoxal dependent decarboxylase domain containing 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100772549, updated on 28-May-2021

Summary

Gene symbol
Pdxdc1
Gene description
pyridoxal dependent decarboxylase domain containing 1
See related
Ensembl:ENSCGRG00015026364
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
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Genomic context

See Pdxdc1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
27
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613911.1 (1547951..1610471)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276807.1 (75013289..75076144, complement)

NW_003613911.1Genomic Context describing neighboring genes Neighboring gene bMERB domain containing 1 Neighboring gene uncharacterized LOC103163744 Neighboring gene MARCKS-related protein-like Neighboring gene MPV17 mitochondrial inner membrane protein like Neighboring gene uncharacterized LOC118239654 Neighboring gene N-terminal asparagine amidase Neighboring gene RRN3 homolog, RNA polymerase I transcription factor

Genomic regions, transcripts, and products

General protein information

Preferred Names
pyridoxal-dependent decarboxylase domain-containing protein 1
Names
Pyridoxal-dependent decarboxylase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613911.1 Reference CriGri_1.0 Primary Assembly

    Range
    1547951..1610471
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027436779.2XP_027292580.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X5

  2. XM_003502743.2XP_003502791.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_003502791.1

    UniProtKB/TrEMBL
    G3HFN7
    Conserved Domains (1) summary
    cl18945
    Location:172394
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  3. XM_007643368.2XP_007641558.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

    See identical proteins and their annotated locations for XP_007641558.1

    Conserved Domains (1) summary
    cl18945
    Location:157379
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  4. XM_016975756.1XP_016831245.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

  5. XM_016975754.2XP_016831243.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X2

  6. XM_027436780.2XP_027292581.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X7

  7. XM_007643367.4XP_007641557.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

    See identical proteins and their annotated locations for XP_007641557.1

    Conserved Domains (1) summary
    cl18945
    Location:157379
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  8. XM_016975755.3XP_016831244.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

  9. XM_035456070.1XP_035311961.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X6

    Conserved Domains (1) summary
    cl18945
    Location:82304
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

Alternate CriGri-PICRH-1.0

Genomic

  1. NW_023276807.1 Alternate CriGri-PICRH-1.0

    Range
    75013289..75076144 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027387900.2XP_027243701.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X5

    Related
    ENSCGRP00015035143.1
  2. XM_027387894.2XP_027243695.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X1

  3. XM_027387899.2XP_027243700.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

  4. XM_027387897.2XP_027243698.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    cl18945
    Location:157379
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  5. XM_035452768.1XP_035308659.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X8

    Conserved Domains (1) summary
    cl18945
    Location:115337
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  6. XM_027387898.2XP_027243699.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

  7. XM_035452767.1XP_035308658.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    cl18945
    Location:157379
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  8. XM_027387896.1XP_027243697.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    cl18945
    Location:157379
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  9. XM_035452769.1XP_035308660.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X6

    Conserved Domains (1) summary
    cl18945
    Location:82304
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  10. XM_027387895.2XP_027243696.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X2

    Related
    ENSCGRP00015035104.1
  11. XM_027387901.2XP_027243702.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X7

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