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LE1 lectin [ Glycine max (soybean) ]

Gene ID: 100818710, updated on 7-Dec-2023

Summary

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Gene symbol
LE1
Gene description
lectin
Locus tag
GLYMA_02G012600v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
SBA; Agglutinin
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 2 NC_016089.4 (1124613..1125630)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 2 NC_016089.3 (1124450..1125467)

Chromosome 2 - NC_016089.4Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 5C-2 Neighboring gene calvin cycle protein CP12-1, chloroplastic Neighboring gene bZIP transcription factor bZIP60 Neighboring gene vacuolar protein sorting-associated protein 51 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. X-ray crystallographic studies of unique cross-linked lattices between four isomeric biantennary oligosaccharides and soybean agglutinin. Olsen LR, et al. Biochemistry, 1997 Dec 9. PMID 9398234
  2. X-ray crystal structure of the soybean agglutinin cross-linked with a biantennary analog of the blood group I carbohydrate antigen. Dessen A, et al. Biochemistry, 1995 Apr 18. PMID 7711015
  3. cA lectin gene insertion has the structural features of a transposable element. Vodkin LO, et al. Cell, 1983 Oct. PMID 6313203

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lectin
Names
lectin 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001354824.1 → NP_001341753.1  lectin precursor

    Status: VALIDATED

    Source sequence(s)
    ACUP04000438, AI941004, CA802137
    UniProtKB/Swiss-Prot
    P05046
    UniProtKB/TrEMBL
    A0A0R0KZI2
    Conserved Domains (1) summary
    cd06899
    Location:36 → 264
    lectin_legume_LecRK_Arcelin_ConA; legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016089.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    1124613..1125630
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P05046.1 GenPept UniProtKB/Swiss-Prot:P05046

Gene LinkOut

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Molecular Biology Databases