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FGF12-AS1 FGF12 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100873986, updated on 10-Oct-2023

Summary

Official Symbol
FGF12-AS1provided by HGNC
Official Full Name
FGF12 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40234
See related
Ensembl:ENSG00000231383 AllianceGenome:HGNC:40234
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
3q28
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (192238630..192283097)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (194934513..194978965)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (191956419..192000886)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124906318 Neighboring gene Sharpr-MPRA regulatory region 9727 Neighboring gene NANOG hESC enhancer GRCh37_chr3:191903818-191904328 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15006 Neighboring gene fibroblast growth factor 12 Neighboring gene uncharacterized LOC124906320 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_67460 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:192134687-192135404 Neighboring gene Sharpr-MPRA regulatory region 7499 Neighboring gene Sharpr-MPRA regulatory region 196 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:192233174-192234373 Neighboring gene FGF12 antisense RNA 2 Neighboring gene FGF12 antisense RNA 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046596.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    DB034608
    Related
    ENST00000414920.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    192238630..192283097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    194934513..194978965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)